PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_19DC0CA31.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 232aa    MW: 25003.9 Da    PI: 6.8248
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_19DC0CA31.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.4e-10140189554
                            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                            kr++r   NR +A rs +RK  ++ eLe+kv++L++e ++L  +l   + 
  Traes_4DL_19DC0CA31.1 140 KRAKRILANRQSAARSKERKARYMTELERKVQTLQTEATTLSAQLTLFQR 189
                            9****************************************998876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-15136200IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.668138201IPR004827Basic-leucine zipper domain
PfamPF001708.4E-9140194IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.03E-11140191No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-8140195No hitNo description
CDDcd147031.61E-18141190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAAAATAMRG AHHRRARSEV AFRLPDDLDI GGGADGDGSA GFDEIGSEDD LFSTFMDIEK  60
ISSGPAAGSD RDRDRAAETS SPPRPKHRYS SSVDGSGLFS AAGSAARRDA GAAQALADVL  120
EAKKAMSPEQ LAELAAIDPK RAKRILANRQ SAARSKERKA RYMTELERKV QTLQTEATTL  180
SAQLTLFQRD TTGLSSENAE LKIRLQAMEQ QAQLRDALND ALKQEVERLK MA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692850.0AK369285.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2088F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557964.11e-135PREDICTED: transcription factor RF2b
SwissprotQ6S4P41e-120RF2B_ORYSJ; Transcription factor RF2b
TrEMBLW5EFL21e-164W5EFL2_WHEAT; Uncharacterized protein
STRINGMLOC_60045.11e-139(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-68bZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]